Bioinformatics Applications Course (ZOO 5903/4903)
-
Jonathan D. Wren
-
Fall 2006
-
MW 10:30-11:45
-
Sutton Hall, Room 312
- Course
Syllabus (MS Word format)
- Class
report project (MS Word)
- Note: Lectures & homeworks are generally not
posted here until after class
- .
-
-
Exam 1 material (Genomes & DNA)
-
- Lecture 1 - Introduction
- Powerpoint
-
- Lecture 2 - Genome
features & sequencing
- Powerpoint
- Homework
#1
-
- Lecture 3 - Sequence
Alignment
- Powerpoint
- Lecture 4 - Multiple
Sequence Alignment
- Powerpoint
- Homework
#2
- Lecture 5 - Phylogenetics
- Powerpoint
- Lecture 6 - Genome
analysis and diversity
- Powerpoint
Exam 2 material (Transcription & RNA)
Lecture 7 - Gene finding in prokaryotes
Powerpoint
Lecture 8 - Gene finding in eukaryotes
Powerpoint
Homework
#3 + Loots
paper, Test_Seq,
Genomic_Region_1
Lecture 9 - Alternative splicing and microRNAs
Powerpoint
Lecture 10 - Gene expression & microarray
technology
Powerpoint
Homework
#4
Lecture 11 - Microarrays - processing &
normalization
Powerpoint
Lecture 12 - Microarrays - clustering &
analysis
Powerpoint
Homework
#5 Microarray
dataset
Lecture 13 - RNA secondary structure
Powerpoint
Exam 3 material (Proteins)
Lecture 14 - Introduction to proteomics
Powerpoint
Lecture 15 - Proteomics II - protein domains &
post-translational modifications
Powerpoint
Homework
#6 Protein1
Lecture 16 - Predicting protein 3D structure
Powerpoint
Lecture 17 - Susan Schroeder guest lecture
Powerpoint
Homework
#7
Lecture 18 - Protein-protein interaction networks + order,
chaos & complexity
Powerpoint
Lecture 19 - Immunoinformatics
Powerpoint
Homework
#8
Lecture 20 - Cheminformatics
Powerpoint
Exam 4 material (Systems
Biology)
Lecture 21 - Network motifs & biological
pathways
Powerpoint
Supplementary
reading
material S6
Lecture 22 - Artificial Life
Powerpoint
Supplementary
reading material S7
Lecture 23 - Text mining
Powerpoint
Supplementary
reading material S8
Homework
#9
Lecture 24 - Cell simulation and modeling
Powerpoint
Supplementary
reading material S11
Lecture 25 - Systems Biology
Powerpoint
Supplementary
reading material S9
Lecture 26 - Synthetic Biology
Powerpoint
Supplementary
reading material S10
Lecture 27 - Review for Final Exam
Powerpoint